The theory of an eddy viscosity model is applied to the study of the flow in a compound channel which is partially vegetated. The governing equation is constituted by analyzing the longitudinal forces acting on the unit volume where the effect of the vegetation on the flow is considered as a drag force item. The compound channel is divided into 3 sub-regions in the transverse direction, and the coefficients in every region's differential equations were solved simultaneously. Thus, the analytical solution of the transverse distribution of the depth-averaged velocity for uniform flow in a partially vegetated compound channel was obtained. The results can be used to predict the transverse distribution of bed shear stress, which has an important effect on the transportation of sediment. By comparing the analytical results with the measured data, the analytical solution in this paper is shown to be sufficiently accurate to predict most hydraulic features for engineering design purposes.