Applied Mathematics and Mechanics (English Edition) ›› 2008, Vol. 29 ›› Issue (3): 379-387 .doi: https://doi.org/10.1007/s10483-008-0309-x

• Articles • 上一篇    下一篇

"Final all possible steps" approach for accelerating stochastic simulation of coupled chemical reactions

周文, 彭新俊, 刘祥, 闫正楼, 王翼飞   

  • 收稿日期:2007-08-03 修回日期:2008-01-05 出版日期:2008-03-10 发布日期:2008-03-10
  • 通讯作者: 王翼飞

"Final all possible steps" approach for accelerating stochastic simulation of coupled chemical reactions

ZHOU Wen, PENG Xin-jun, LIU Xiang, YAN Zheng-lou, WANG Yi-fei   

    1. Department of Mathematics, Shanghai University, Shanghai 200444, P. R. China;
    2. Department of Mathematics, Anhui Normal University, Wuhu 241000, Anhui Province, P. R. China
  • Received:2007-08-03 Revised:2008-01-05 Online:2008-03-10 Published:2008-03-10
  • Contact: WANG Yi-fei

Abstract: In this paper, we develop a modified accelerated stochastic simulation method for chemically reacting systems, called the "final all possible steps" (FAPS) method, which obtains the reliable statistics of all species in any time during the time course with fewer simulation times. Moreover, the FAPS method can be incorporated into the leap methods, which makes the simulation of larger systems more efficient. Numerical results indicate that the proposed methods can be applied to a wide range of chemically reacting systems with a high-precision level and obtain a significant improvement on efficiency over the existing methods.

Key words: "final all possible steps" approach, stochastic simulation algorithm, chemically reacting systems

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